EFFICIENT SEMI-AUTOMATIC MAINTENANCE OF MAPPING BETWEEN ONTOLOGIES IN A BIOMEDICAL ENVIRONMENT

Imen Ketata, Riad Mokadem, Franck Morvan, Abdelkader Hameurlain

2010

Abstract

In dynamic environments like data management in biomedical domain, adding a new element (e.g. concept) to an ontology O1 requires significant mapping creations between O1 and the ontologies linked to it. To avoid this mapping creation for each element addition, old mappings can be reused. Hence, the nearest element w to the added one should be retrieved in order to reuse its mapping schema. In this paper, we deal with the existing additive axiom which can be used to retrieve this w. However, in such axiom, the usage of some parameters like the number of element occurrence appears insufficient. We introduce the calculation of similarity and the user’s opinion note in order to have more precision and semantics in the w retrieval. An illustrative example is presented to estimate our contribution.

References

  1. Aumueller, David, Do, Hong-Hai, Massmann, Sabine and Rahm, Erhard, 2005. Schema and Ontology Matching with COMA++. ACM SIGMOD International Conference on Management of Data, Baltimore, Maryland.
  2. Choi, Namyoum, Song, Il-Yeol and Han, Hyoil, 2006. A Survey on Ontology Mapping. ACM SIGMOD Record.
  3. Couto, Francisco M., Silva, Mario J., Coutinho and Pedro M., 2007. Measuring semantic similarity between Gene Ontology terms. Data & Knowledge Engineering Journal.
  4. Davidson, S., Overton, C. and Buneman, P., 1995. Challenges in Integrating Biological Data Sources. Journal of Computational Biology.
  5. Do, Hong-Hai and Rahm, Erhard, 2002. COMA-A system for flexible combination of schema matching approaches. VLDB Conference, Hong Kong, China.
  6. Doan, AnHai, Madhavan, Jayant, Domingos, Pedro and Halevey, Alon, 2002. “Learning to Map between Ontologies on the semantic Web”. WWW Conference, Honolulu, Hawaii, USA.
  7. Drumm, Christian, Schmitt, Matthias and Do, Hong-Hai, 2007. QuickMig-Automatic Schema Matching for Data Migration Projects. ACM CIKM Conference, Lisbon, Portugal.
  8. Hakimpour, Farshad and Geppert, Andeas, 2002. Global Schema Generation Using Formal Ontologies. International Conference on Conceptual Modeling, Finland.
  9. Hammer, J. and Schneider, M., 2003. Genomics Algebra: A New, Integrating Data Model, Language, and Tool Processing and Querying Genomic Information. CIDR Conference, Asilomar, CA.
  10. Hernandez, Thomas and Kambhampati, Subbarao, 2004. Integration of Biological Sources: Current Systems and Challenges Ahead. ACM SIGMOD Record.
  11. Jonquet, Clement, Musen, Mark A. and Shah, Nigam, 2008. A System for Ontology-Based Annotation of Biomedical Data. DILS Workshop, Paris, France.
  12. Karmakar, Samir, 2007. Designing Domain Ontology: A Study in Lexical Semantics. Technical Report, Indian Institute of Technology Kanpur, Kanpur, India.
  13. Madhavan, Jayant, A. Bernstein, Philip and Rahm, Erhard, 2001. Generic Schema Matching with Cupid. Microsoft Research (extended version of VLDB Conference paper).
  14. Melnik, Sergey, Garcia-Molina, Hector and Rahm, Erhard, 2002. Similarity Flooding: A Versatile Graph Matching Algorithm and its Application to Schema Matching. ICDE Conference, San Jose, CA.
  15. Silva, Nuno and Rocha, Joa, 2003. “MAFRA-An Ontology Mapping FRAmework for the Semantic Web”. International Conference on Business Information Systems, USA.
  16. Weeds, Julie and Weir, David, 2005. Co-occurrence Retrieval: A Flexible Framework for Lexical Distributional Similarity. MIT Press Journals.
  17. Zhong, Jiwei, Zhu, Haiping, Li, Jianming and Yu, Yong, 2002. Conceptual Graph Matching for Semantic Search. ICCS Conference, Borovets, Bulgaria.
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Paper Citation


in Harvard Style

Ketata I., Mokadem R., Morvan F. and Hameurlain A. (2010). EFFICIENT SEMI-AUTOMATIC MAINTENANCE OF MAPPING BETWEEN ONTOLOGIES IN A BIOMEDICAL ENVIRONMENT . In Proceedings of the 12th International Conference on Enterprise Information Systems - Volume 1: ICEIS, ISBN 978-989-8425-04-1, pages 257-262. DOI: 10.5220/0002905702570262


in Bibtex Style

@conference{iceis10,
author={Imen Ketata and Riad Mokadem and Franck Morvan and Abdelkader Hameurlain},
title={EFFICIENT SEMI-AUTOMATIC MAINTENANCE OF MAPPING BETWEEN ONTOLOGIES IN A BIOMEDICAL ENVIRONMENT},
booktitle={Proceedings of the 12th International Conference on Enterprise Information Systems - Volume 1: ICEIS,},
year={2010},
pages={257-262},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002905702570262},
isbn={978-989-8425-04-1},
}


in EndNote Style

TY - CONF
JO - Proceedings of the 12th International Conference on Enterprise Information Systems - Volume 1: ICEIS,
TI - EFFICIENT SEMI-AUTOMATIC MAINTENANCE OF MAPPING BETWEEN ONTOLOGIES IN A BIOMEDICAL ENVIRONMENT
SN - 978-989-8425-04-1
AU - Ketata I.
AU - Mokadem R.
AU - Morvan F.
AU - Hameurlain A.
PY - 2010
SP - 257
EP - 262
DO - 10.5220/0002905702570262