Model of Software and Hardware Infrastructure for Electrophysiology

Petr Ježek, Jan Štěbeták, Petr Brůha, Roman Mouček

Abstract

Large amounts of EEG/ERP (electroencephalography, event-related potential) data, various data formats and non-standardized domain description lead to incompatible results and interpretations of EEG/ ERP experimental data/metadata and to difficult communication between interested laboratories. Authors’ research group has solved these problems and has contributed to the building of a neuroinformatics infrastructure by developing and integrating data management and analytic tools for EEG/ERP research. The model of the software and hardware infrastructure for electrophysiology, and the context and architecture of the developed EEG/ERP Portal, serving to manage, share and process EEG/ERP experiments, are presented. Other additional tools are briefly described.

References

  1. Berners-Lee, T., Hendler, J., and Lassila, O. (2001). The semantic web, scientific american magazine.
  2. Carmen (2012). Carmen portal. http://www.carmen.org.uk/.
  3. Gupta, A., Bug, W., Marenco, L., Qian, X., Condit, C., Rangarajan, A., Müller, H. M., Miller, P. L., Sanders, B., Grethe, J. S., Astakhov, V., Shepherd, G., Sternberg, P. W., and Martone, M. E. (2008). Federated access to heterogeneous information resources in the neuroscience information framework (nif). Neuroinformatics 6, pages 205-217.
  4. INCF (2012). International neuroinformatics coordinating facility. http://www.incf.org/about/ what-is-neuroinformatics.
  5. Java (2012). Java annotations. http:// download.oracle.com/ javase/1.5.0/docs/guide/language/annotations.html.
  6. Jena (2011). Jena framework. http://jena.sourceforge.net.
  7. Jez?ek, P. and Moucc?ek, R. (2011). Integration of signal processing methods into eeg/erp system. In Traver, V., Fred, A. L. N., Filipe, J., and Gamboa, H., editors, HEALTHINF, pages 563-566. SciTePress.
  8. Liu, F., Wang, J., and Dillon, S. T. (2007). Web information representation, extraction and reasoning based on existing programming technology. In Computational Inteligence 37, pages 147-168.
  9. Mouc?ek, R. and Jez?ek, P. (2010). System for storage and management of eeg/erp experiments - generation of ontology. In Filipe, J. and Cordeiro, J., editors, ICEIS (1), pages 415-420. SciTePress.
  10. NEMO (2011). Neural electro magnetic ontologies. http://nemo.nic.uoregon.edu/wiki/NEMO.
  11. Oren, E., Delbru, R., Gerke, S., Haller, A., and Decker, S. (2007). Activerdf: object-oriented semantic web programming. pages 817-824.
  12. OWL (2012). Owl api. http://owlapi.sourceforge.net/.
  13. Po-Huan, C., Chi-Chuan, L., and Kuo-Ming, C. (2009). Integrationg semanic web and object-oriented programming for cooperative design. Journal of University Computer Science,vol. 15, no. 9.
  14. R?ondik, T., Ciniburk, J., Mouc?ek, R., and Mautner, P. (2011). Erp components detection using wavelet transform and matching pursuit algorithm. In Applied Electronics (AE), 2011 International Conference on, pages 1 -4.
  15. Watson, P., Jackson, T., Pitsilis, G., Gibson, F., Austin, J., Fletcher, M., Liang, B., and Lord, P. (2007). The CARMEN Neuroscience Server. In Proceedings of the UK e-Science All hands Meeting, pages 135-141.
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Paper Citation


in Harvard Style

Ježek P., Štěbeták J., Brůha P. and Mouček R. (2013). Model of Software and Hardware Infrastructure for Electrophysiology . In Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2013) ISBN 978-989-8565-37-2, pages 352-356. DOI: 10.5220/0004245103520356


in Bibtex Style

@conference{healthinf13,
author={Petr Ježek and Jan Štěbeták and Petr Brůha and Roman Mouček},
title={Model of Software and Hardware Infrastructure for Electrophysiology},
booktitle={Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2013)},
year={2013},
pages={352-356},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0004245103520356},
isbn={978-989-8565-37-2},
}


in EndNote Style

TY - CONF
JO - Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2013)
TI - Model of Software and Hardware Infrastructure for Electrophysiology
SN - 978-989-8565-37-2
AU - Ježek P.
AU - Štěbeták J.
AU - Brůha P.
AU - Mouček R.
PY - 2013
SP - 352
EP - 356
DO - 10.5220/0004245103520356