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Authors: Björn Sommer ; Jörn Künsemöller ; Norbert Sand ; Arne Husemann ; Madis Rumming and Benjamin Kormeier

Affiliation: University of Bielefeld, Germany

Keyword(s): Cell visualization, Pathway visualization in 3D, KEGG, BRENDA, UniProt.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Artificial Intelligence ; Bioinformatics ; Biomedical Engineering ; Databases and Data Management ; Soft Computing ; Systems Biology ; Visualization ; Web Services in Bioinformatics

Abstract: The high potential of Bioinformatics research concerning quantitative and qualitative data acquisition such as data warehouses, spatial structure prediction and 3D microscopy conveys the vision of generating a computational virtual cell. This paper discusses an approach which allows the creation and exploration of an abstract compartmented cell environment, which can be used for (semi-)automatic, species- and organelle-specific mapping and the comparison of metabolic data.

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Paper citation in several formats:
Sommer, B.; Künsemöller, J.; Sand, N.; Husemann, A.; Rumming, M. and Kormeier, B. (2010). CELLMICROCOSMOS 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. In Proceedings of the First International Conference on Bioinformatics (BIOSTEC 2010) - BIOINFORMATICS; ISBN 978-989-674-019-1; ISSN 2184-4305, SciTePress, pages 90-95. DOI: 10.5220/0002692500900095

@conference{bioinformatics10,
author={Björn Sommer. and Jörn Künsemöller. and Norbert Sand. and Arne Husemann. and Madis Rumming. and Benjamin Kormeier.},
title={CELLMICROCOSMOS 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment},
booktitle={Proceedings of the First International Conference on Bioinformatics (BIOSTEC 2010) - BIOINFORMATICS},
year={2010},
pages={90-95},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002692500900095},
isbn={978-989-674-019-1},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the First International Conference on Bioinformatics (BIOSTEC 2010) - BIOINFORMATICS
TI - CELLMICROCOSMOS 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment
SN - 978-989-674-019-1
IS - 2184-4305
AU - Sommer, B.
AU - Künsemöller, J.
AU - Sand, N.
AU - Husemann, A.
AU - Rumming, M.
AU - Kormeier, B.
PY - 2010
SP - 90
EP - 95
DO - 10.5220/0002692500900095
PB - SciTePress

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