Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences

Yuichi Shimaya; Kouich Hirata

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Paper

Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences

Topics: Bioinformatics and Systems Biology; Knowledge Acquisition and Representation

In Proceedings of the 12th International Conference on Pattern Recognition Applications and Methods ICPRAM - Volume 1, 344-349, 2023 , Lisbon, Portugal

Authors: Yuichi Shimaya and Kouich Hirata

Affiliation: Kyushu Institute of Technology, Kawazu 680-4, Iizuka 820-8502, Japan

Keyword(s): Correlated Mutation, Structural Proteins, Spike Protein Substutution, Amino Acid Sequences, SARS-CoV-2, Delta Variant, Omicron Variant.

Abstract: In this paper, we find the correlated mutations of positions among structural proteins of spike, envelop, membrane and nucleocapsid proteins in amino acid sequences of SARS-CoV-2. Here, we adopt the algorithm designed by Shimada et al. (2012) of finding the correlated mutations formulated by joint entropy. In particular, we discuss whether or not the found correlated mutations contains spike protein substitutions in SARS-CoV-2 Delta and Omicron variants.

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Paper citation in several formats:

Shimaya, Y. and Hirata, K. (2023). Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences. In Proceedings of the 12th International Conference on Pattern Recognition Applications and Methods - ICPRAM; ISBN 978-989-758-626-2; ISSN 2184-4313, SciTePress, pages 344-349. DOI: 10.5220/0011676000003411

@conference{icpram23,
author={Yuichi Shimaya. and Kouich Hirata.},
title={Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences},
booktitle={Proceedings of the 12th International Conference on Pattern Recognition Applications and Methods - ICPRAM},
year={2023},
pages={344-349},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0011676000003411},
isbn={978-989-758-626-2},
issn={2184-4313},
}

TY - CONF

JO - Proceedings of the 12th International Conference on Pattern Recognition Applications and Methods - ICPRAM
TI - Correlated Mutations of Positions Among Structural Proteins in Delta and Omicron Variants for SARS-CoV-2 Amino Acid Sequences
SN - 978-989-758-626-2
IS - 2184-4313
AU - Shimaya, Y.
AU - Hirata, K.
PY - 2023
SP - 344
EP - 349
DO - 10.5220/0011676000003411
PB - SciTePress