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Authors: Matteo Campana 1 ; Cecilia Zanella 1 ; Barbara Rizzi 1 ; Paul Bourgine 2 ; Nadine Peyriéras 2 and Alessandro Sarti 1

Affiliations: 1 Bologna University, Italy ; 2 CREA-Ecole Polytechnique, France

ISBN: 978-989-8111-21-0

Keyword(s): Image Segmentation, Surface Geometry and Shape Extraction, Biological Image Analysis.

Related Ontology Subjects/Areas/Topics: Computer Vision, Visualization and Computer Graphics ; Feature Extraction ; Features Extraction ; Image and Video Analysis ; Informatics in Control, Automation and Robotics ; Segmentation and Grouping ; Signal Processing, Sensors, Systems Modeling and Control ; Surface Geometry and Shape

Abstract: Confocal laser scanning microscopy provides nondestructive in vivo imaging to capture specific structures that have been fluorescently labeled, such as cell nuclei and membranes, throughout early Zebrafish embryogenesis. With this strategy we aim at reconstruct in time and space the biological structures of the embryo during the organogenesis. In this paper we propose a method to extract bounding surfaces at the cellular-organization level from microscopy images. The shape reconstruction of membranes and nuclei is obtained first with an automatic identification of the cell center and then a subjective surfaces based segmentation is used to extract the bounding surfaces.

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Paper citation in several formats:
Campana M.; Zanella C.; Rizzi B.; Bourgine P.; Peyriéras N.; Sarti A. and (2008). A SUBJECTIVE SURFACES BASED SEGMENTATION FOR THE RECONSTRUCTION OF BIOLOGICAL CELL SHAPE.In Proceedings of the Third International Conference on Computer Vision Theory and Applications - Volume 1: VISAPP, (VISIGRAPP 2008) ISBN 978-989-8111-21-0, pages 555-558. DOI: 10.5220/0001086005550558

@conference{visapp08,
author={Matteo Campana and Cecilia Zanella and Barbara Rizzi and Paul Bourgine and Nadine Peyriéras and Alessandro Sarti},
title={A SUBJECTIVE SURFACES BASED SEGMENTATION FOR THE RECONSTRUCTION OF BIOLOGICAL CELL SHAPE},
booktitle={Proceedings of the Third International Conference on Computer Vision Theory and Applications - Volume 1: VISAPP, (VISIGRAPP 2008)},
year={2008},
pages={555-558},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0001086005550558},
isbn={978-989-8111-21-0},
}

TY - CONF

JO - Proceedings of the Third International Conference on Computer Vision Theory and Applications - Volume 1: VISAPP, (VISIGRAPP 2008)
TI - A SUBJECTIVE SURFACES BASED SEGMENTATION FOR THE RECONSTRUCTION OF BIOLOGICAL CELL SHAPE
SN - 978-989-8111-21-0
AU - Campana, M.
AU - Zanella, C.
AU - Rizzi, B.
AU - Bourgine, P.
AU - Peyriéras, N.
AU - Sarti, A.
PY - 2008
SP - 555
EP - 558
DO - 10.5220/0001086005550558

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