cswHMM: A NOVEL CONTEXT SWITCHING HIDDEN MARKOV MODEL FOR BIOLOGICAL SEQUENCE ANALYSIS Topics: Data Mining and Machine Learning; Model Design and Evaluation; Pattern Recognition, Clustering and Classification; Sequence Analysis In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 0BIOSTEC, 208-213, 2012 , Vilamoura, Algarve, Portugal