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Authors: Felix Bollenbeck 1 ; Diana Weier 2 ; Wolfram Schoor 1 and Udo Seiffert 1

Affiliations: 1 Fraunhofer Institute for Factory Operation and Automation (IFF), Germany ; 2 Leibniz Institute of Plant Genetics and Crop Plant Research, Germany

Keyword(s): Registration, Segmentation, 3-D Averaging Atlases, Plant Models.

Related Ontology Subjects/Areas/Topics: Applications ; Computer Vision, Visualization and Computer Graphics ; Enhancement and Restoration ; Geometry and Modeling ; Image and Video Analysis ; Image Formation and Preprocessing ; Image Formation, Acquisition Devices and Sensors ; Image Registration ; Image-Based Modeling ; Pattern Recognition ; Segmentation and Grouping ; Software Engineering

Abstract: In this paper we describe an automated processing of plant serial section data for high-resolution 3-D models of internal structures. The processing pipeline includes standardization and registration of large image stacks as well as multiple tissue recognition by a joint registration-segmentation approach. By integrating segmented data from multiple individuals in a common reference, a statistical three-dimensional description is used to represent the inherent biodiversity amongst specimen. Inter-individual 3-D models are a novelty in the context of plant microscopy, and along with meaningful visualisation they deliver new insights into growth and development as well as provide a framework for the integration of functional data.

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Paper citation in several formats:
Bollenbeck, F.; Weier, D.; Schoor, W. and Seiffert, U. (2009). FROM INDIVIDUAL INTENSITY VOXEL DATA TO INTER-INDIVIDUAL PROBABILISTIC ATLASES OF BIOLOGICAL OBJECTS BY AN INTERLEAVED REGISTRATION-SEGMENTATION APPROACH. In Proceedings of the Fourth International Conference on Computer Vision Theory and Applications (VISIGRAPP 2009) - Volume 1: VISAPP; ISBN 978-989-8111-69-2; ISSN 2184-4321, SciTePress, pages 125-128. DOI: 10.5220/0001767001250128

@conference{visapp09,
author={Felix Bollenbeck. and Diana Weier. and Wolfram Schoor. and Udo Seiffert.},
title={FROM INDIVIDUAL INTENSITY VOXEL DATA TO INTER-INDIVIDUAL PROBABILISTIC ATLASES OF BIOLOGICAL OBJECTS BY AN INTERLEAVED REGISTRATION-SEGMENTATION APPROACH},
booktitle={Proceedings of the Fourth International Conference on Computer Vision Theory and Applications (VISIGRAPP 2009) - Volume 1: VISAPP},
year={2009},
pages={125-128},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0001767001250128},
isbn={978-989-8111-69-2},
issn={2184-4321},
}

TY - CONF

JO - Proceedings of the Fourth International Conference on Computer Vision Theory and Applications (VISIGRAPP 2009) - Volume 1: VISAPP
TI - FROM INDIVIDUAL INTENSITY VOXEL DATA TO INTER-INDIVIDUAL PROBABILISTIC ATLASES OF BIOLOGICAL OBJECTS BY AN INTERLEAVED REGISTRATION-SEGMENTATION APPROACH
SN - 978-989-8111-69-2
IS - 2184-4321
AU - Bollenbeck, F.
AU - Weier, D.
AU - Schoor, W.
AU - Seiffert, U.
PY - 2009
SP - 125
EP - 128
DO - 10.5220/0001767001250128
PB - SciTePress

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