MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS’ SPOTS

António dos Anjos; Bjarne Kjær Ersbøll; Faroq AL-Tam; Hamid Reza Shahbazkia

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Paper

MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS’ SPOTS

Topics: Genomics and Proteomics; Image Analysis

In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms - Volume 0BIOSTEC, 111-117, 2012 , Vilamoura, Algarve, Portugal

Authors: António dos Anjos ¹ ; Bjarne Kjær Ersbøll ² ; Faroq AL-Tam ¹ and Hamid Reza Shahbazkia ¹

Affiliations: ¹ University of Algarve, Portugal ; ² Technical University of Denmark, Denmark

Keyword(s): 2-D Electrophoresis, Matching, Registration.

Related Ontology Subjects/Areas/Topics: Bioinformatics ; Biomedical Engineering ; Genomics and Proteomics ; Image Analysis

Abstract: This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels’ spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.

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Paper citation in several formats:

dos Anjos, A.; Kjær Ersbøll, B.; AL-Tam, F. and Reza Shahbazkia, H. (2012). MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS’ SPOTS. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS; ISBN 978-989-8425-90-4; ISSN 2184-4305, SciTePress, pages 111-117. DOI: 10.5220/0003702401110117

@conference{bioinformatics12,
author={António {dos Anjos}. and Bjarne {Kjær Ersbøll}. and Faroq AL{-}Tam. and Hamid {Reza Shahbazkia}.},
title={MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS’ SPOTS},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS},
year={2012},
pages={111-117},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003702401110117},
isbn={978-989-8425-90-4},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2012) - BIOINFORMATICS
TI - MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS’ SPOTS
SN - 978-989-8425-90-4
IS - 2184-4305
AU - dos Anjos, A.
AU - Kjær Ersbøll, B.
AU - AL-Tam, F.
AU - Reza Shahbazkia, H.
PY - 2012
SP - 111
EP - 117
DO - 10.5220/0003702401110117
PB - SciTePress