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Authors: Gabriel Kind ; Eric Zuchantke and Röbbe Wünschiers

Affiliation: University of Applied Sciences Mittweida, Germany

Keyword(s): Synthetic Biology, Big Data, Omics, Warehouses, Databases, Knowledge-base, Wisdom of the Crowd.

Related Ontology Subjects/Areas/Topics: Algorithms and Software Tools ; Artificial Intelligence ; Bioinformatics ; Biomedical Engineering ; Databases and Data Management ; Genomics and Proteomics ; Model Design and Evaluation ; Soft Computing ; Visualization

Abstract: Nowadays, life science research is dominated by two conditions: interdisciplinarity and high-throughput. The former leads to highly diverse datasets from a data type point of view while high-throughput yields massive amounts of data. Both aspects are reflected by the byte-growth of public bio-databases and the sheer number of specialised databases or databases of databases (i.e. data warehouses). We provide an insight to the development of a biodata knowledge base (dubbed CyanoFactory KB) targeted to bio-engineers in the field of synthetic biology and exemplify the need for data type specific data curation and cross-linking. CyanoFactory KB is unique in incorporating experimental data from a broad range of scientific methods that are based on one strain of Synechocystis sp. PCC 6803. The knowledge base can be accessed upon request via cyanofactory.hs-mittweida.de.

CC BY-NC-ND 4.0

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Paper citation in several formats:
Kind, G., Zuchantke, E. and Wünschiers, R. (2015). CyanoFactory Knowledge Base & Synthetic Biology - A Plea for Human Curated Bio-databases. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2015) - BIOINFORMATICS; ISBN 978-989-758-070-3; ISSN 2184-4305, SciTePress, pages 237-242. DOI: 10.5220/0005285802370242

@conference{bioinformatics15,
author={Gabriel Kind and Eric Zuchantke and Röbbe Wünschiers},
title={CyanoFactory Knowledge Base & Synthetic Biology - A Plea for Human Curated Bio-databases},
booktitle={Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2015) - BIOINFORMATICS},
year={2015},
pages={237-242},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0005285802370242},
isbn={978-989-758-070-3},
issn={2184-4305},
}

TY - CONF

JO - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOSTEC 2015) - BIOINFORMATICS
TI - CyanoFactory Knowledge Base & Synthetic Biology - A Plea for Human Curated Bio-databases
SN - 978-989-758-070-3
IS - 2184-4305
AU - Kind, G.
AU - Zuchantke, E.
AU - Wünschiers, R.
PY - 2015
SP - 237
EP - 242
DO - 10.5220/0005285802370242
PB - SciTePress

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