CONCEPTUAL MODELING OF HUMAN GENOME MUTATIONS - A Dichotomy Between what we Have and What we Should Have
M. Ángeles Pastor, Verónica Burriel Coll, Óscar Pastor
2010
Abstract
It is well-known in the bioinformatics domain that the millions of mutations and polymorphisms that occur in human populations are potential predictors of disease and any other type of human health related problems. Finding sound strategies for going from the Genotype to the Phenotype is probably the main challenge of the modern bioinformatics. Only with the sound knowledge provided by the IS theory, a systematic approach to large-scale analysis of Genotype-Phenotype correlations can be developed. The conceptual expressiveness of a well-known and widely-accepted database that stores the current information about genome mutations, Human Gene Mutation Database, is compared with the information that is relevant from a purely conceptual modelling perspective, and the result from this comparison is reported.
References
- George R. A., Smith T. D., Callaghan S., Hardman L., Pierides C., Horaitis O., Wouters M. A. and Cotton R.G.H., 2007. General mutation databases: analysis and review. In J. Med. Genet. published online 24 Sep; doi:10.1136/jmg.2007.052639, http://jmg.bmj. com /cgi/rapidpdf/jmg.2007.052639v1.pdf.
- Hamosh A. et als., 2005. Online Mendelian Inheritance in Man (OMIM), a knowledge base of human genes and genetic disorders. In Nucleic Acids Research 33:D514- D517.
- Pastor, O. 2008. Conceptual Modeling Meets the Human Genome. In Conceptual Modeling-ER 2008, Li Q., Spaccapietra S., Yu E. and Olivé A. (eds.). LNCS, vol 5231, pp 1-11 Springer, Berlin Heidelberg.
- Paton W.N., Khan S., Hayes A., Moussouni F., Brass A., Eilbeck K., Globe C., Hubbard S., Oliver S., 2000: Conceptual modeling of genomic information. In Bioinformatics. 16, 6, 548-57.
- Stenson et als. 2009, The Human Gene Mutation Database (HGMD®): 2008 Update. In Genome Med (2009) 1(1):13
- Virrueta A., et al. (2009): Enforcing Conceptual Modeling to Improve the Understanding of Human Genome. Poster and Demo Proceedings DILS 2009. pp. 29.
- Wheeler D. A. et als., 2008. The Complete Genome Of An Individual By Massivelly Parallel DNA Sequencing. In Nature. Vol. 452/17, April 2008, 872-877.
- Yandell M. et als., 2008. Genome-Wide Analysis of Human Disease Alleles Reveals That Their Location Are Correlated in Paralogous Proteins. In PLoS Computational Biology, Vol.4(11):e1000218, doi: 10.1371/journal.pcbi.1000218.
Paper Citation
in Harvard Style
Ángeles Pastor M., Burriel Coll V. and Pastor Ó. (2010). CONCEPTUAL MODELING OF HUMAN GENOME MUTATIONS - A Dichotomy Between what we Have and What we Should Have . In Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010) ISBN 978-989-674-019-1, pages 160-166. DOI: 10.5220/0002741201600166
in Bibtex Style
@conference{bioinformatics10,
author={M. Ángeles Pastor and Verónica Burriel Coll and Óscar Pastor},
title={CONCEPTUAL MODELING OF HUMAN GENOME MUTATIONS - A Dichotomy Between what we Have and What we Should Have},
booktitle={Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)},
year={2010},
pages={160-166},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002741201600166},
isbn={978-989-674-019-1},
}
in EndNote Style
TY - CONF
JO - Proceedings of the First International Conference on Bioinformatics - Volume 1: BIOINFORMATICS, (BIOSTEC 2010)
TI - CONCEPTUAL MODELING OF HUMAN GENOME MUTATIONS - A Dichotomy Between what we Have and What we Should Have
SN - 978-989-674-019-1
AU - Ángeles Pastor M.
AU - Burriel Coll V.
AU - Pastor Ó.
PY - 2010
SP - 160
EP - 166
DO - 10.5220/0002741201600166