but the other components, with weights 2
b. j
, j < n − 1
may invert the sign of the argument of the σ function.
Subspace analysis is thus a crucial step in the whole
process for the selection of relevant components.
2.3.4 From LMBP to Segmentation
Once LMBP and contrast have been computed for
each pixel location, we were interested in image seg-
mentation using these features. Several approaches
can be performed, e.g.:
• incorporate these operators in a vector describ-
ing the pixel properties, with other relevant val-
ues (e.g. values of the first principal components).
The set of these vectors then serves as an input of
an unsupervised clustering algorithm
• compute a local 2D joint distribution (LMBP,C
P,R
)
for each pixel, and use an adapted metric to cluster
pixels.
In this preliminary study, we chose to use the first al-
ternative. More precisely, a classical K-means algo-
rithm was used as a clustering method, using the Eu-
clidean metric to cluster feature vectors that the next
section will detail.
3 RESULTS
We apply the LMBP operator to the problem of mul-
tispectral MR image segmentation problem. As test
data we used simulated MRI-datasets generated with
the Internet connected MRI Simulator at the Mc-
Connell Brain Imaging Centre in Montreal
(www.bic.mni.mcgill.ca/brainweb/). The datasets we
used were based on an anatomical model of a normal
brain that results from registering and preprocessing
27 scans from the same individual with subsequent
semi-automated segmentation. In this dataset the dif-
ferent tissue types were well-defined, both “fuzzy”
and “crisp” tissue membership were allocated to each
voxel. From this tissue labeled brain volume the MR
simulation algorithm, using discrete-event simulation
of the pulse sequences based on the Bloch equations,
predicted signal intensities and image contrast in a
way that is equivalent to data acquired with a real
MR-scanner. Both sequence parameters and the effect
of partial volume averaging, noise, and intensity non-
uniformity were incorporated in the simulation results
(Cocosco et al., 1997; Kwan et al., 1999).
Ten multispectral (T1-weighted,T2-weighted, Proton
density) MR datasets of a central slice (including the
main brain tissues, basal ganglia and fine to coarse
details), with variations of the parameters ”noise” and
”intensity non-uniformity (RF)” were chosen (table
1), the slice thickness being equal to 1mm. This se-
lection covers the whole range of the parameter values
available in BrainWeb so that the comparability with
real data can be considered as sufficient to test the ro-
bustness of the method at varying image qualities.
Table 1: MR Datasets.
dataset no dataset name noise RF
1 n1rf20 1% 20%
2 n1rf40 1% 40%
3 n3rf20 3% 20%
4 n3rf40 3% 40%
5 n5rf20 5% 20%
6 n5rf40 5% 40%
7 n7rf20 7% 20%
8 n7rf40 7% 40%
9 n9rf20 9% 20%
10 n9rf40 9% 40%
For obtaining the true volumes of brain tissues and
background the corresponding pixels were counted in
the ground truth image provided by BrainWeb.
We performed three types of analysis for each dataset,
first transformed by a subspace analysis method
(namely the PCA). More precisely, we characterized
pixels with several types of feature vectors:
• either the vector of the first principal components,
or a vector composed of the first principal compo-
nents, the LMBP and the contrast operators (In-
terest of LMBP and Multispectral Contrast in the
segmentation process, section 3.1).
• either a vector composed of the first principal
components, the LMBP and the contrast oper-
ators, or a vector composed of the first princi-
pal components, the multispectral and the contrast
operators as computed in (Song et al., 2006) (sec-
tion 3.2)
In the following, we present results from dataset
n9rf20 (figure 2) and use as LBP parameters R =
1.5,P = 12. All features were normalized by their
max value to cluster homogeneous values.
3.1 Multispectral Texture Information
Figure 3 presents the results of the segmentation of
the brain slice in 4 classes: background (BG, light
gray), Cerebrospinal fluid (CSF, dark gray), white
matter (WM, black) and gray matter (GM, white). S1
is the segmentation obtained with only the two first
principal components, S2 with these two components
plus the LMBP and the contrast operator values.
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