UNIFIED PARALLEL EXPERIMENT INTERFACE FOR MEDICAL RESEARCH SYSTEM

Michal Kratochvíl, Petr Vcelák, Jana Klecková

2012

Abstract

When we are processing large quantity of a data, and/or we are computing complex tasks, computational performance of one computer is not enough. Solution is parallel processing. However proper approach to parallel programming doesn’t need to well-known to medical experts or computational tool doesn’t have native support for parallel programming. Our goal is to design unified interface, which allows parallel approach to our medical researchers. It must provide support for existing medical experiments and it must provide full interoperability.

References

  1. ANL Mathematics and Computer Science (2011). Message passing interface (mpi) standard. Online, 2011-10-02. http://www.mcs.anl.gov/research/projects/mpi/.
  2. Bodenreider, O. and Stevens, R. (2006). Bio-ontologies: current trends and future directions. Briefings in Bioinformatics, 7(3):256 - 274.
  3. Health Level Seven, Inc. (2010). What is hl7? Online, 2011-10-02. http://www.hl7.org/about/index.cfm.
  4. Ibán˜ez L., Schroeder W., Ng L., Cates J. (2003). The ITK Software Guide, Kitware.
  5. National Institute of Neurological Disorders and Stroke (2010). Digital Imaging and Communications in Medicine (DICOM). Online, 2011-10-01. http://medical.nema.org.
  6. Oak Ridge National Laboratory (2011). Parallel Virtual Machine (PVM). Online, 2011-10-02. http://www.csm.ornl.gov/pvm/.
  7. Vcelak, P. and Kleckova, J. (2011). Semantically interoperable research medical data and meta data extraction strategy. 2011 4rd International Conference on Biomedical Engineering and Informatics BMEI 2011, 4:1950 - 1954.
  8. Wolf, I., Vetter, M., Wegner, I., Böttger, T., Nolden, M., Schöbinger, M., Hastenteufel, M., Kunert, T., and Meinzer, H.-P. (2005). The medical imaging interaction toolkit. Medical Image Analysis, 9(6):594 - 604.
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Paper Citation


in Harvard Style

Kratochvíl M., Vcelák P. and Klecková J. (2012). UNIFIED PARALLEL EXPERIMENT INTERFACE FOR MEDICAL RESEARCH SYSTEM . In Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2012) ISBN 978-989-8425-88-1, pages 449-452. DOI: 10.5220/0003873404490452


in Bibtex Style

@conference{healthinf12,
author={Michal Kratochvíl and Petr Vcelák and Jana Klecková},
title={UNIFIED PARALLEL EXPERIMENT INTERFACE FOR MEDICAL RESEARCH SYSTEM},
booktitle={Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2012)},
year={2012},
pages={449-452},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0003873404490452},
isbn={978-989-8425-88-1},
}


in EndNote Style

TY - CONF
JO - Proceedings of the International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2012)
TI - UNIFIED PARALLEL EXPERIMENT INTERFACE FOR MEDICAL RESEARCH SYSTEM
SN - 978-989-8425-88-1
AU - Kratochvíl M.
AU - Vcelák P.
AU - Klecková J.
PY - 2012
SP - 449
EP - 452
DO - 10.5220/0003873404490452