Noise Influence on Low Contrast Image Correction for Soft X-Ray Projection Microscopy
Erdenetogtokh Jamsranjav, Tatsuo Shiina, Kenichi Kuge, Atsushi Ito, Yasuhito Kinjo
2016
Abstract
Soft X-ray projection microscopy has been developed for high magnified imaging of hydrated biological specimens because water window region is available. The projection microscopy is a simple optical layout and has advantages over other types of microscopes particularly for biological specimens because of its wide viewing area, easy zooming function and easy extension to CT. However the projection image is blurred by the diffraction of X-rays, resulting in the deterioration of the spatial resolution. In this study, the blurred images have been corrected by an iteration procedure, i.e., Fresnel and inverse Fresnel transformations are repeated. The correction was found to be not effective for every image, especially for images with low contrast. A contrast enhancement method prior to the iteration procedure was installed to make the iteration procedure more effective, but it was not enough yet due to the influence of background noise. We evaluated dependency between the background noise level and iteration effect in the cases with or without the contrast enhancement prior to the iteration procedure by simulation. We also demonstrated upper limits of the background noises which chromosome images are effectively corrected by the iteration procedure.
References
- Jamsranjav, E., Shiina, T., Kuge, K., Kinjo, Y., Nakamura, Y., Shinohara, K. and Ito, A. (2015) Effect of Contrast Enhancement Prior to Iteration Procedure on Image Correction for Soft X-ray Projection Microscopy, Journal of Physics: Conference Series (AIP) [submitted]
- Legall, H., Stiel, H., Blobel, G., Seim, C., Baumann, J., Yulin, S., Esser, D., Hoefer, M., Wiesemann, U., Wirtz, M., Schneider, G., Rehbein, S. and Hertz, H., M. (2013) A compact laboratory transmission X-ray microscope for the water window, Journal of Physics: Conference Series (IOP), Vol.463, pp.12013-1 - 12013-4
- Weigert, R., Prat-Shliom, N. and Amornphimoltham, P. (2013) Imaging Cell Biology in Live Animals: Ready for Prime time, J Cell Biol. 201(7): 969-979
- Al-amri, S. S., Kalyankar, N. V., and Khamitkar, S. D. (2010) Linear and Non-linear Contrast Enhancement Image, IJCSNS International Journal of Computer Science and Network Security, VOL.10 No.2, 139-143
- Shiina, T., Suzuki, T., Honda, T., Ito, A., Kinjo, Y., Yoshimura, H., Yada, K. and Shinohara, K. (2009) Fresnel Diffraction Correction by Phase-considered Iteration Procedure in Soft X-ray Projection Microscopy, Journal of Physics: Conference Series (IOP), Vol.186, pp.12059-1 - 12059-3
- Bertilson, M., Holfsten O., Vogt, U., Holmberg, A. and Hertz, H. M. (2009) High-resolution computed tomography with a compact soft x-ray microscope, Optics Express, Vol.17, No.13, 11057-11065
- David, S., Pierre, T., Tobias B., Veit, E., Malcolm, H., Chris, J., Janos, K., Enju, L., Huijie, M., Aaron, M. N., and David, S. (2005) Biological imaging by soft x-ray diffraction microscopy, PNAS Proceedings of the National Academy of Sciences of the United States of America, Vol.102, No.43, 15343-45346
- Schneider, G., Niemann, B., Gutmann, P., Weib, D., Scharf, J. G., Rudolph, D. and Schmahl, G. (2000) Visualization of 30nm Structures in Frozen-hydrated Biological Samples by Cryo Transmission X-ray Microscopy, AIP Conference Proceeding 507, 3
- Kirz, J., Jacobsen, C. and Howells, M. (1995) Soft X-ray Microscopes and Their Biological Applications, Quarterly Reviews of Biophysics 28, 33-130
Paper Citation
in Harvard Style
Jamsranjav E., Shiina T., Kuge K., Ito A. and Kinjo Y. (2016). Noise Influence on Low Contrast Image Correction for Soft X-Ray Projection Microscopy . In Proceedings of the 4th International Conference on Photonics, Optics and Laser Technology - Volume 1: PHOTOPTICS, ISBN 978-989-758-174-8, pages 169-176. DOI: 10.5220/0005747001690176
in Bibtex Style
@conference{photoptics16,
author={Erdenetogtokh Jamsranjav and Tatsuo Shiina and Kenichi Kuge and Atsushi Ito and Yasuhito Kinjo},
title={Noise Influence on Low Contrast Image Correction for Soft X-Ray Projection Microscopy},
booktitle={Proceedings of the 4th International Conference on Photonics, Optics and Laser Technology - Volume 1: PHOTOPTICS,},
year={2016},
pages={169-176},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0005747001690176},
isbn={978-989-758-174-8},
}
in EndNote Style
TY - CONF
JO - Proceedings of the 4th International Conference on Photonics, Optics and Laser Technology - Volume 1: PHOTOPTICS,
TI - Noise Influence on Low Contrast Image Correction for Soft X-Ray Projection Microscopy
SN - 978-989-758-174-8
AU - Jamsranjav E.
AU - Shiina T.
AU - Kuge K.
AU - Ito A.
AU - Kinjo Y.
PY - 2016
SP - 169
EP - 176
DO - 10.5220/0005747001690176