enes
Gene Symbol
Up-regulated
genes
DYRK1A,PPP3CA,SKP1,EP300,TAF9,DLD,HBB,*CYCS,UBE2K,YWHAE,NDUFS1,HMGB1,HPRT1,GLUL,A
IFM1,SMS,CLINT1,TCP1,HSPA9,MTHFR,REL,CARD8,OPA1,GLO1,FBXO7,MTR,NDUFA5,GSTO1,SON,GT
F2I,YWHAZ,CDC42,CREB1,ATF6,ITM2B,UCHL3,ATG5,DR1,CHMP2B,DECR1,ADRBK2,FMR1,RAN,MUTE
D,BNIP3L,MAP2K3,UBE2L3,ALDH2,TFAM,BCL10,PDCD2,PARK7,DNM1L,PPM1A,FECH,PDHB,EGLN1,P
DP1,RBX1,MAP2K4,APPL1,PTEN,GSK3B,TXN,SSR1,SFPQ,SLC2A1,FAS,MEF2A,MXI1,ARPP19,SERPINI1,
YY1,NUCB2,DEK,TP53INP1,BAG5,MAPK14,YWHAQ,C1orf9,LARS,FKBP1A,ZCRB1,MYO5A,ABHD5,PANK
2,PCNA,ARHGDIB,NEDD8,TAF1,GCLC,CD55,RB1,NOC2L,IRF2,BCKDHB,FLOT1,RNF41,DPYSL2,ABAT,
USP24,MTIF3,SRI,GLB1,*BCL2L11,LAMP2,GTPBP4,POLG,PSMC1,GNE,AGPS,PDIA3,MAP3K5,PSMD9,A
NXA1,ASPSCR1,DLG4,ATXN3,NDUFB6,UBE2A,HSD17B4,TFCP2,CNDP2,*APAF1,MSN,PGK1,CBS,MTFM
T,AOC3,MAPK1,*BCL2L1,KIAA1267,FXN,TUBB,GNPTAB,HSPA4,GPI,GLUD1,UBB,HSPA8,MEA1,PSMA6,
EIF2AK2,PPP4C,EIF2AK3,DPYD,BCL2L2,B2M,BAP1,LMNA,S100A6,HSP90AB1,TARDBP,HSF1,MRPS7,M
AP3K7,SMG1,FOXO4,MBP,LIAS,GCH1,LPP,FANCB,SHMT1,TFB2M,IKBKAP,MDM2,SSNA1,PRRG4,NDUF
S4,EIF2C2,MTSS1,SNCA,IMMT,RTN4,ACTB,COPS2,AHR,HSPA5,PRKAA1,YWHAH,SMN2,ADCY7,ACO2,HS
PD1,PTPRC,CAST,RAF1,GSN,PAWR,SLC6A8,NMT1,PAF1,PPP3CC,HNMT,TBP,LIMS1,UPP1,NONO,CTNN
BL1,HSPA1A,PES1,LMOD1,IQCB1,HDAC9,PDLIM7,CHM,VIM,TOR1B,UBR5,ATP1A3,HIF1A,BRCA1,SDP
R,SMARCB1,TSPO,AGFG1,ERGIC2,DHDDS,CSNK2A1,TKT,CD44,PARP1,GALC,RAI1,GALNS,PDPK1,TUB
A1A,MAP3K1,CASP1,ENO1,UROD,PPARA,KIF11,MAP2K1,CANX,RB1CC1,TNFRSF1A,FES,IGF2R,DLX4,U
CHL1,GATA1,KIAA0101,HLAE,TUBB3,AES,CA1,PTPN11,IDE,SOD1,PON2,ITGAM,PINK1,ANXA5,NOD2,H
Down-regulated
genes
BEST1,SOX1,FHIT,PRNP,CKB,TPSG1,THY1,GRIN1,EN2,SYN1,ZFPM1,TH,*BCL2,CD4,GDNF,BBC3,SLC17
A7,AVP,CHRNA4,ATN1,FGF3,*BAX,DRD4,ALDOA,ACAP3,TBX1,OXT,DRD2,GGT1,MYC,GFRA3
*, the final six genes
3.2 GO and Pathway Enrichment
Analysis
To better understand the functions of overlapping
genes, GO and KEGG pathway enrichment analyses
were analyzed using an online tool DAVID. Figure 2
showed that the top six significant enrichment terms
for biological process (BP), cellular component (CC),
molecular function (MF) and KEGG of overlapping
genes. In BP annotation, it was significantly involved
in the cell death, apoptotic process, and regulation of
programmed cell death, which are all related to
neuronal cell death as the major event in PD. In the
CC category, it was mainly involved in the cytosol,
mitochondrion, myelin sheath. In the MF category,
genes were primarily enriched in “ubiquitin-like
protein ligase binding”, “enzyme binding” and
“protein kinase binding”. KEGG analysis showed that
the overlapping genes were mainly involved in
Alzheimer's disease, Parkinson's disease and
apoptosis.
Figure 2. The top six significant GO terms and KEGG pathways of common genes. The bar charts represent the counts of
genes classified in the BP, CC, MF and KEGG respectively; the yellow line chart represents the significance of enrichment
terms. GO, gene ontology; BP, biological process; CC, cellular component; MF, molecular function; KEGG, Kyoto
Encyclopedia of Genes and Genomes.