Pan-genomic Analysis of Bradyrhizobium japonicum

Ruihan Ma

2022

Abstract

The rhizobium-legume symbiosis is a major source of fixed nitrogen (ammonia) in the biosphere—the potential for this process to increase agricultural yield while reducing the reliance on nitrogen-based fertilizers. Bradyrhizobium is an ancient type of soybean nitrogen-fixing symbiotic bacteria. The Bradyrhizobium japonicum under the bacterial genus classification is widely used as a promotional species in actual agricultural production. However, the use of rhizobium also faces some practical problems, like Its nitrogen fixation capacity is unstable. Despite much current research on Bradyrhizobium japonicum, it often focuses on the molecular mechanism of a certain gene or protein, failing to study the environmental adaptability of such bacteria, and failing to study the function and characteristics of bacteria from a genomic perspective. The paper focuses on Pan-genome to study Bradyrhizobium japonicum. Through the obtained genome information tested for line integrity using CheckM and BUSCO, analysis of the Meverage nucleotide consistency (similarity) ANI, and analysis of the secondary metabolite, the genomic dynamics of soybean bradyrhizobium is initially revealed and provides research clues for the analysis of its bacterial functional evolution mechanism and environmental adaptability.

Paper Citation

in Harvard Style

Ma R. (2022). Pan-genomic Analysis of Bradyrhizobium japonicum. In Proceedings of the 4th International Conference on Biomedical Engineering and Bioinformatics - Volume 1: ICBEB, ISBN 978-989-758-595-1, pages 1031-1040. DOI: 10.5220/0011376000003443

in Bibtex Style

@conference{icbeb22,
author={Ruihan Ma},
title={Pan-genomic Analysis of Bradyrhizobium japonicum},
booktitle={Proceedings of the 4th International Conference on Biomedical Engineering and Bioinformatics - Volume 1: ICBEB,},
year={2022},
pages={1031-1040},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0011376000003443},
isbn={978-989-758-595-1},
}

in EndNote Style

TY - CONF

JO - Proceedings of the 4th International Conference on Biomedical Engineering and Bioinformatics - Volume 1: ICBEB,
TI - Pan-genomic Analysis of Bradyrhizobium japonicum
SN - 978-989-758-595-1
AU - Ma R.
PY - 2022
SP - 1031
EP - 1040
DO - 10.5220/0011376000003443