QUERY BY IMAGE MEDICAL TRAINING - Optical Biopsy with Confocal Endoscopy (OB-CEM)

Olga Ferrer, Vinicius Duval, Jaime Delgado, Claudio Rolim, Ruben Tous

2010

Abstract

The use of Optical Biopsies-OB (in the present case Confocal endomicroscopy-CEM) is limited due to difficulties to interpret images. The OB-CEM are taken by endoscopists, not trained in microscopic mor-phology which is the domain of the surgical pathology. To gain diagnostic confidence the endoscopists could consult the images to a pathologist or could use the technique proposed in the paper. That is, to search for similar images on Internet to compare the diagnosis. The present paper is a positioning paper of how to build a CEM-image metadata to be used by the multimedia standards ISO-15938-12:2008 and ISO-24800-3 in order to search on line using a “query by image”. Metadata semantics based on Kudo colorectal crypt architecture was used for annotation or automatic image extraction. The training set was composed of 25 OB-CEM chromo-colonoscopy images taken with a FICE (Fujinon Intelligent Chromoendoscopy). Those parameters were, whenever possible, automatically extracted from the image and included in the metadata for image mining. Future developments will annotate histological images is such a way that the query could also retrieve the histological image.

References

  1. Wang TD, VanDam J.(2004) Optical Biopsy: A New Frontier in Endoscopic Detection and Diagnosis. Clin Gastroenterol Hepatol 2(9): 744-753.
  2. Ferrer-Roca O. (2008) Superresolution and Optical Biopsy. In CATAI 2009: Super-resolution and optical Biopsy. CATAI editions. Tenerife. Pp:45-54. ISBN: 978-84-612-8620-1.
  3. Ferrer-Roca O. (2009) Endomicroscopia en anatomia patologica. Biopsia óptica. Rev.Esp.Patologia (accepted in 2009 and waiting to be published)
  4. R. Tous (2008) Query formats for multimedia applications ISO/IEC 15938-12 (MPEG Query Format) & ISO/IEC 24800 (JPSearch) In CATAI 2009: Super-resolution and optical Biopsy. CATAI editions. Tenerife. Pp25- 32.
  5. Nawei Chen, Hagit Shatka, Dorothea Blostein, "Use of Figures in Literature Mining for Biomedical Digital Libraries," dial, pp.180-197, Second International Conference on Document Image Analysis for Libraries (DIAL'06), 2006
  6. Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi, "Figure Classification in Biomedical Literature towards Figure Mining," bibm, pp.263-269, 2008 IEEE InternationalConference on Bioinformatics and Biomedicine, 2008
  7. Kiesslich R., Galle PR & Neurath MF. Atlas of endomicroscopy. Springer-Verlag Heidelberg 2008. ISBN 978-3-540-34757-6
  8. Hersch WR., Bhuptiraju RT., Ross L., Johnson P., Cohen AM., & Kraemer DF. “TREC 2004 Genomics Track overview” Proc of TREC 2004 NIST Special Publication 2005 http://ir.ohsu.edu/genomics
  9. ISO/IEC 15938-12:2008 Information Technology - Multimedia Content Description Interface - Part 12:Query Format.
  10. ISO/IEC 24800-3:2008 CD Information technology - JPSearch - Part 3: JPSearch Query format. Output document from the 45th ISO/IEC JTC 1/SC 29/WG 1 Poitiers meeting, July 7th to 11th, 2008
  11. ISO/IEC 15938 Version 2. Information Technology - Multimedia Content Description Interface (MPEG-7), 2004.
  12. XQuery 1.0: An XML Query Language. W3C Proposed Recommendation 21 November 2006. See http://www.w3.org/TR/xquery/.
  13. Mathias Lux, Savvas A. Chatzichristofis: Lire: lucene image retrieval: an extensible java CBIR library. ACM Multimedia 2008: 1085-1088
Download


Paper Citation


in Harvard Style

Ferrer O., Duval V., Delgado J., Rolim C. and Tous R. (2010). QUERY BY IMAGE MEDICAL TRAINING - Optical Biopsy with Confocal Endoscopy (OB-CEM) . In Proceedings of the Third International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2010) ISBN 978-989-674-016-0, pages 166-172. DOI: 10.5220/0002691601660172


in Bibtex Style

@conference{healthinf10,
author={Olga Ferrer and Vinicius Duval and Jaime Delgado and Claudio Rolim and Ruben Tous},
title={QUERY BY IMAGE MEDICAL TRAINING - Optical Biopsy with Confocal Endoscopy (OB-CEM)},
booktitle={Proceedings of the Third International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2010)},
year={2010},
pages={166-172},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0002691601660172},
isbn={978-989-674-016-0},
}


in EndNote Style

TY - CONF
JO - Proceedings of the Third International Conference on Health Informatics - Volume 1: HEALTHINF, (BIOSTEC 2010)
TI - QUERY BY IMAGE MEDICAL TRAINING - Optical Biopsy with Confocal Endoscopy (OB-CEM)
SN - 978-989-674-016-0
AU - Ferrer O.
AU - Duval V.
AU - Delgado J.
AU - Rolim C.
AU - Tous R.
PY - 2010
SP - 166
EP - 172
DO - 10.5220/0002691601660172