Processing Magnetic Resonance Image Features with One-class Support Vector Machines - Investigation of the Autism Spectrum Disorder Heterogeneity
Ilaria Gori, Alessia Giuliano, Piernicola Oliva, Michela Tosetti, Filippo Muratori, Sara Calderoni, Alessandra Retico
2016
Abstract
Support Vector Machine (SVM) classifiers are widely used to analyse features extracted from brain MRI data to identify useful biomarkers of pathology in several disease conditions. They are trained to distinguish patients from healthy control subjects by making a binary classification of image features extracted by image processing algorithms. This task is particularly challenging when dealing with psychiatric disorders, as the reported neuroanatomical alterations are often very small and quite un-replicated within different studies. Subtle signs of pathology are difficult to catch especially in extremely heterogeneous conditions such as Autism Spectrum Disorders (ASD). We propose the use of the One-Class Classification (OCC) or Data Description method that, in contrast with two-class classification, is based on a description of one class of objects only. Then, new examples are tested for their similarity to the examples of this target class, end eventually considered as outliers. The application of the OCC to features extracted from brain MRI of children affected by ASD and control subjects demonstrated that a common pattern of features characterize the ASD population.
References
- Calderoni, S., Retico, A., Biagi, L., Tancredi, R., Muratori, F., Tosetti, M., 2012. Female children with autism spectrum disorder: an insight from massunivariate and pattern classification analyses. Neuroimage, 59:1013-1022.
- Centers for Disease Control and Prevention, CDCP, 2014. Prevalence of ASD, MMWR, 63:1-22.
- Ecker, C., Marquand, A., Mourão-Miranda, J., Johnston, P., Daly, E. M., Brammer, M. J., Maltezos, S., Murphy, C. M., Robertson, D., Williams, S. C., Murphy, D. G., 2010. Describing the brain in autism in five dimensions-magnetic resonance imaging-assisted diagnosis of autism spectrum disorder using a multiparameter classification approach. J Neurosci ,30: 10612-10623.
- Fischl, B., ,vanderKouwe, A., Destrieux, C., et al, 2004. Automatically parcellating the human cerebral cortex. Cereb Cortex, 14: 11-22.
- Gaonkar, B., Davatzikos, C., 2013. Analytic estimation of statistical significance maps for support vector machine based multi-variate image analysis and classification. Neuroimage, 78: 270-283.
- Gori, I., Giuliano, A., Muratori, F., Saviozzi, I., Oliva, P., Tancredi, R., Cosenza, A., Tosetti, M., Calderoni, S., Retico, A., 2015. Gray Matter Alterations in Young Children with Autism Spectrum Disorders: Comparing Morphometry at the Voxel and Regional Level. J Neuroimaging, 25(6):866-74. doi: 10.1111/jon.12280.
- Ingalhalikar, M., Parker, D., Bloy, L., Roberts, T. P., Verma, R., 2011. Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD. Neuroimage, 57:918-927.
- Jiao, Y., Chen, R., Ke, X., Ch,u K., Lu, Z., Herskovits, E. H., 2010. Predictive models of autism spectrum disorder based on brain regional cortical thickness. Neuroimage, 50:89-599.
- Klein, A., Tourville, J., 2012. 101 labeled brain images and a consistent human cortical labeling protocol. Front Neurosci, 6:171.
- Metz, C. E., 2006. Receiver operating characteristics analysis: a tool for the quantitative evaluation of observer performance and imaging systems. J Am Coll Radiol, 3:413-422.
- Mourão-Miranda, J., Bokde, A. L., Born, C., Hampel, H., Stetter, M., 2005. Classifying brain states and determining the discriminating activation patterns: Support Vector Machine on functional MRI data. Neuroimage, 28(4):980-95.
- Mourão-Miranda, J., Hardoon, D. R., Hahn, T., Marquand, A. F., Williams, S. C., Shawe-Taylor, J., Brammer, M., 2011. Patient classification as an outlier detection problem: An application of the One-Class Support Vector Machine. Neuroimage, (3-4):793-804. doi:10.1016/j.neuroimage.2011.06.042.
- Moya, M., Koch, M., & Hostetler, L., 1993. One-class classifier networks for target recognition applications. In Proceedings World Congress on Neural Networks, 797-801. Portland, OR: International Neural Network Society.
- Orrù, G., Pettersson-Yeo, W., Marquand, A.F., et al., 2012. Using support vector machine to identify imaging biomarkers of neurological and psychiatric disease: a critical review. Neurosci Biobehav Rev 36(4):1140-1152.
- Retico, A., Tosetti, M., Muratori, F., Calderoni, S, 2015. Neuroimaging-based methods for autism identification: a possible translational application? Functional Neurology CIC Edizioni Internazionali, 29(4):231-239. ISSN:0393-5264.
- Schölkopf, B., Mika, S., Burges, C. C., Knirsch, P., Müller, K. R., Rätsch, G., Smola, A. J., 1999. Input space versus feature space in kernel-based methods. IEEE Trans Neural Netw, 10(5):1000-17.
- Schölkopf, B., Smola, A., J., Williamson, R., Barlett, P. L., 2000. New Support Vector Algorithms, Neural Computation, 12:1207-1245.
- Schölkopf, B., Platt, J., Shawe-Taylor, J. A. S., Williamson, R., 2001. Estimating the support of a high-dimensional distribution. Neural Computation, 13:7.
- Vapnik, V., 1995. The nature of Statistical Learning Theory, Berlin.
- Wanh, Z., Childress A. R., Wang, J., Detre, J. A., 2007. Support vector machine learning-based fMRI data group analysis. Neuroimage, 36(4):1139-51.
- Zhou, Y., Yu, F., Duong, T., 2014. Multiparametric MRI Characterization and Prediction in Autism Spectrum Disorder Using Graph Theory and Machine Learning. PLoS ONE 9(6): e90405.
Paper Citation
in Harvard Style
Gori I., Giuliano A., Oliva P., Tosetti M., Muratori F., Calderoni S. and Retico A. (2016). Processing Magnetic Resonance Image Features with One-class Support Vector Machines - Investigation of the Autism Spectrum Disorder Heterogeneity . In Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 2: BIOIMAGING, (BIOSTEC 2016) ISBN 978-989-758-170-0, pages 111-117. DOI: 10.5220/0005776001110117
in Bibtex Style
@conference{bioimaging16,
author={Ilaria Gori and Alessia Giuliano and Piernicola Oliva and Michela Tosetti and Filippo Muratori and Sara Calderoni and Alessandra Retico},
title={Processing Magnetic Resonance Image Features with One-class Support Vector Machines - Investigation of the Autism Spectrum Disorder Heterogeneity},
booktitle={Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 2: BIOIMAGING, (BIOSTEC 2016)},
year={2016},
pages={111-117},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0005776001110117},
isbn={978-989-758-170-0},
}
in EndNote Style
TY - CONF
JO - Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 2: BIOIMAGING, (BIOSTEC 2016)
TI - Processing Magnetic Resonance Image Features with One-class Support Vector Machines - Investigation of the Autism Spectrum Disorder Heterogeneity
SN - 978-989-758-170-0
AU - Gori I.
AU - Giuliano A.
AU - Oliva P.
AU - Tosetti M.
AU - Muratori F.
AU - Calderoni S.
AU - Retico A.
PY - 2016
SP - 111
EP - 117
DO - 10.5220/0005776001110117