A Wavelet Scattering Convolutional Network for Magnetic Resonance Spectroscopy Signal Quantitation

Amirmohammad Shamaei, Amirmohammad Shamaei, Jana Starčuková, Zenon Starčuk Jr.

2021

Abstract

Magnetic resonance spectroscopy (MRS) can provide quantitative information about local metabolite concentrations in living tissues, but in practice the quantification can be difficult. Recently deep learning (DL) has been used for quantification of MRS signals in the frequency domain, and DL combined with time-frequency analysis for artefact detection in MRS. The networks most widely used in previous studies were Convolutional Neural Networks (CNN). Nonetheless, the optimal architecture and hyper-parameters of the CNN for MRS are not well understood; CNN has no knowledge about the nature of the MRS signal and its training is computationally expensive. On the other hand, Wavelet Scattering Convolutional Network (WSCN) is well-understood and computationally cheap. In this study, we found that a wavelet scattering network could hopefully be also used for metabolite quantification. We showed that a WSCN could yield results more robust than QUEST (one of quantitation methods based on model fitting) and the same as a CNN while being faster. We used wavelet scattering transform to extract features from the MRS signal, and a superficial neural network implementation to predict metabolite concentrations. Effects of phase, noise, and macromolecules variation on the WSCN estimation accuracy were also investigated.

Paper Citation

in Harvard Style

Shamaei A., Starčuková J. and Starčuk Jr. Z. (2021). A Wavelet Scattering Convolutional Network for Magnetic Resonance Spectroscopy Signal Quantitation. In Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2021) - Volume 4: BIOSIGNALS; ISBN 978-989-758-490-9, SciTePress, pages 268-275. DOI: 10.5220/0010318500002865

in Bibtex Style

@conference{biosignals21,
author={Amirmohammad Shamaei and Jana Starčuková and Zenon Starčuk Jr.},
title={A Wavelet Scattering Convolutional Network for Magnetic Resonance Spectroscopy Signal Quantitation},
booktitle={Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2021) - Volume 4: BIOSIGNALS},
year={2021},
pages={268-275},
publisher={SciTePress},
organization={INSTICC},
doi={10.5220/0010318500002865},
isbn={978-989-758-490-9},
}

in EndNote Style

TY - CONF

JO - Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2021) - Volume 4: BIOSIGNALS
TI - A Wavelet Scattering Convolutional Network for Magnetic Resonance Spectroscopy Signal Quantitation
SN - 978-989-758-490-9
AU - Shamaei A.
AU - Starčuková J.
AU - Starčuk Jr. Z.
PY - 2021
SP - 268
EP - 275
DO - 10.5220/0010318500002865
PB - SciTePress